reference region mask

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Inheritance graph

Defined in file : brainvisa/toolboxes/nuclearimaging/types/nuclearImaging.py

Used in the following processes

Import Vois
Intensity normalisation PET Pipeline (spm12)
Intensity normalisation PET Pipeline (spm8)
Optimal PET Amyloid Long (OPAL spm12)
Optimal PiB Reference Region
pet pipeline using MRI (spm12)
pet pipeline using MRI (spm8)
pet pipeline without MRI (spm12)
pet pipeline without MRI (spm8)
Quality control for Pet with MRI Pipeline
Quality control for Pet without MRI Pipeline
shift volume of interest
view list of image ( check registration )

Associated formats

BrainVISA volume formats
gz compressed NIFTI-1 image
NIFTI-1 image

Associated ontology rules

  • shared :
    • NIT_ROI/roiMasks/VOIReference_{VOIReference}
  • brainvisa-3.2.0 :
    • roiMasks/VOIReference_{VOIReference}
    {center}/{subject}/voi/{acquisition}/pet{tracer}_space/VOIReference_{VOIReference}
    {center}/{subject}/voi/{acquisition}/t1mri_space/VOIReference_{VOIReference}
    {center}/{subject}/voi/{acquisition}/mni{template}_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}_from_{segmentation_method}/pet{tracer}_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}_from_{segmentation_method}/t1mri_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}_from_{segmentation_method}/mni{template}_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}/pet{tracer}_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}/t1mri_space/VOIReference_{VOIReference}
    {center}/{subject}/nuclear_imaging/{processing}/{acquisition}/voi/{analysis}/mni{template}_space/VOIReference_{VOIReference}

    Key attributes

  • shared :
    • VOIReference
  • brainvisa-3.2.0 :
    • center ,  subject ,  processing ,  acquisition ,  analysis ,  segmentation_method ,  tracer ,  VOIReference ,  template